IL_4ADV_044

3D structure

PDB id

4ADV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the E. coli methyltransferase KsgA bound to the E. coli 30S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

13.5 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4ADV_044 not in the Motif Atlas

Homologous match to IL_5J7L_043

Geometric discrepancy: 0.1992

The information below is about IL_5J7L_043

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.3

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

4

Unit IDs

4ADV|1|A|G|993
4ADV|1|A|A|994
4ADV|1|A|C|995
4ADV|1|A|A|996
4ADV|1|A|U|997
*
4ADV|1|A|A|1044
4ADV|1|A|C|1045

Current chains

Chain A

16S RIBOSOMAL RNA

Nearby chains

Chain N

30S RIBOSOMAL PROTEIN S14