IL_4BTS_192

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

UAUCAG*CAGUCACG

Length

14 nucleotides

Bulged bases

4BTS|1|CA|U|304, 4BTS|1|CA|U|342

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_192 not in the Motif Atlas

Homologous match to IL_4V88_402

Geometric discrepancy: 0.113

The information below is about IL_4V88_402

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_45067.5

Basepair signature

cWW-tSH-tSS-tHS-R-cWW-cWW-R

Number of instances in this motif group

16

Unit IDs

4BTS|1|CA|U|302
4BTS|1|CA|A|303
4BTS|1|CA|U|304
4BTS|1|CA|C|305
4BTS|1|CA|A|306
4BTS|1|CA|G|307
*
4BTS|1|CA|C|339
4BTS|1|CA|A|340
4BTS|1|CA|G|341
4BTS|1|CA|U|342
4BTS|1|CA|C|343
4BTS|1|CA|A|344
4BTS|1|CA|C|345
4BTS|1|CA|G|346

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain C2

40S RIBOSOMAL PROTEIN S8

Chain CL

40S RIBOSOMAL PROTEIN S12

Chain CQ

40S RIBOSOMAL PROTEIN RPS11E