IL_4BTS_217

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

AGUU*AGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_217 not in the Motif Atlas

Homologous match to IL_4V88_430

Geometric discrepancy: 0.0746

The information below is about IL_4V88_430

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

4BTS|1|CA|A|849
4BTS|1|CA|G|850
4BTS|1|CA|U|851
4BTS|1|CA|U|852
*
4BTS|1|CA|A|931
4BTS|1|CA|G|932
4BTS|1|CA|A|933
4BTS|1|CA|U|934

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain C4

40S RIBOSOMAL PROTEIN S3A

Chain C6

40S RIBOSOMAL PROTEIN S27

Chain CO

40S RIBOSOMAL PROTEIN RPS13E