IL_4BTS_230

3D structure

PDB id

4BTS (explore in PDB, NAKB, or RNA 3D Hub)

Description

THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A

Experimental method

X-RAY DIFFRACTION

Resolution

3.7 Å

Loop

Sequence

ACA*UCCCU

Length

8 nucleotides

Bulged bases

4BTS|1|CA|C|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4BTS_230 not in the Motif Atlas

Homologous match to IL_4V88_443

Geometric discrepancy: 0.1242

The information below is about IL_4V88_443

Detailed Annotation

C-loop

Broad Annotation

No text annotation

Motif group

IL_63596.9

Basepair signature

cWW-cWS-cHS-L-cWW-tWH

Number of instances in this motif group

15

Unit IDs

4BTS|1|CA|A|1130
4BTS|1|CA|C|1131
4BTS|1|CA|A|1132
*
4BTS|1|CA|U|1589
4BTS|1|CA|C|1590
4BTS|1|CA|C|1591
4BTS|1|CA|C|1592
4BTS|1|CA|U|1593

Current chains

Chain CA

18S ribosomal RNA

Nearby chains

Chain C1

40S RIBOSOMAL PROTEIN RPS28E

Chain C5

40S RIBOSOMAL PROTEIN RPS26E

Chain CG

40S RIBOSOMAL PROTEIN RPS5E

Chain CI

40S RIBOSOMAL PROTEIN RPS16E