3D structure

PDB id
4BTS (explore in PDB, NAKB, or RNA 3D Hub)
Description
THE CRYSTAL STRUCTURE OF THE EUKARYOTIC 40S RIBOSOMAL SUBUNIT IN COMPLEX WITH EIF1 AND EIF1A
Experimental method
X-RAY DIFFRACTION
Resolution
3.7 Å

Loop

Sequence
GUAUUUC*GUAAUC
Length
13 nucleotides
Bulged bases
4BTS|1|CA|A|1461, 4BTS|1|CA|U|1463, 4BTS|1|CA|U|1464, 4BTS|1|CA|A|1488, 4BTS|1|CA|U|1489
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4BTS_248 not in the Motif Atlas
Geometric match to IL_5J7L_055
Geometric discrepancy: 0.1892
The information below is about IL_5J7L_055
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_11344.2
Basepair signature
cWW-cSS-L-cWW
Number of instances in this motif group
2

Unit IDs

4BTS|1|CA|G|1459
4BTS|1|CA|U|1460
4BTS|1|CA|A|1461
4BTS|1|CA|U|1462
4BTS|1|CA|U|1463
4BTS|1|CA|U|1464
4BTS|1|CA|C|1465
*
4BTS|1|CA|G|1485
4BTS|1|CA|U|1486
4BTS|1|CA|A|1487
4BTS|1|CA|A|1488
4BTS|1|CA|U|1489
4BTS|1|CA|C|1490

Current chains

Chain CA
18S ribosomal RNA

Nearby chains

Chain CC
40S RIBOSOMAL PROTEIN RPS3E
Chain CJ
40S RIBOSOMAL PROTEIN RPS20E
Chain CN
40S RIBOSOMAL PROTEIN RPS29E
Chain CT
40S RIBOSOMAL PROTEIN RPS19E

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2865 s
Application loaded.