IL_4CSU_028

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_028 not in the Motif Atlas

Geometric match to IL_5J7L_263

Geometric discrepancy: 0.2194

The information below is about IL_5J7L_263

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_50730.2

Basepair signature

cWW-tSH-tHS-tHS-cWW

Number of instances in this motif group

19

Unit IDs

4CSU|1|B|U|703
4CSU|1|B|G|704
4CSU|1|B|A|705
4CSU|1|B|A|706
4CSU|1|B|G|707
*
4CSU|1|B|U|724
4CSU|1|B|G|725
4CSU|1|B|G|726
4CSU|1|B|A|727
4CSU|1|B|G|728

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2