IL_4CSU_030

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GGG*CAAUC

Length

8 nucleotides

Bulged bases

4CSU|1|B|A|788, 4CSU|1|B|A|789

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_030 not in the Motif Atlas

Homologous match to IL_7A0S_021

Geometric discrepancy: 0.302

The information below is about IL_7A0S_021

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_06549.2

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

4CSU|1|B|G|775
4CSU|1|B|G|776
4CSU|1|B|G|777
*
4CSU|1|B|C|787
4CSU|1|B|A|788
4CSU|1|B|A|789
4CSU|1|B|U|790
4CSU|1|B|C|791

Current chains

Chain B

23S RRNA

Nearby chains

Chain 6

50S RIBOSOMAL PROTEIN L34

Chain C

50S RIBOSOMAL PROTEIN L2

Chain S

50S RIBOSOMAL PROTEIN L22