IL_4CSU_070

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

CGUAAC*GGAGAAG

Length

13 nucleotides

Bulged bases

4CSU|1|B|G|1699

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_070 not in the Motif Atlas

Geometric match to IL_4V9F_063

Geometric discrepancy: 0.1155

The information below is about IL_4V9F_063

Detailed Annotation

tSH-tSH-tHH-tHS

Broad Annotation

No text annotation

Motif group

IL_20700.1

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

10

Unit IDs

4CSU|1|B|C|1686
4CSU|1|B|G|1687
4CSU|1|B|U|1688
4CSU|1|B|A|1689
4CSU|1|B|A|1690
4CSU|1|B|C|1691
*
4CSU|1|B|G|1696
4CSU|1|B|G|1697
4CSU|1|B|A|1698
4CSU|1|B|G|1699
4CSU|1|B|A|1700
4CSU|1|B|A|1701
4CSU|1|B|G|1702

Current chains

Chain B

23S RRNA

Nearby chains

Chain C

50S RIBOSOMAL PROTEIN L2