IL_4CSU_088

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

GAGC*GUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_088 not in the Motif Atlas

Geometric match to IL_4WF9_110

Geometric discrepancy: 0.3676

The information below is about IL_4WF9_110

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_51479.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

4CSU|1|B|G|2100
4CSU|1|B|A|2101
4CSU|1|B|G|2102
4CSU|1|B|C|2103
*
4CSU|1|B|G|2186
4CSU|1|B|U|2187
4CSU|1|B|U|2188
4CSU|1|B|U|2189

Current chains

Chain B

23S RRNA

Nearby chains

Chain 5

50S RIBOSOMAL PROTEIN L1