IL_4CSU_123

3D structure

PDB id

4CSU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of the 50S ribosome subunit bound with ObgE

Experimental method

ELECTRON MICROSCOPY

Resolution

5.5 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CSU_123 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.3204

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

4CSU|1|B|U|1851
4CSU|1|B|U|1852
4CSU|1|B|A|1853
4CSU|1|B|A|1854
4CSU|1|B|U|1855
4CSU|1|B|U|1856
4CSU|1|B|G|1857
4CSU|1|B|A|1858
4CSU|1|B|U|1859
4CSU|1|B|G|1860
*
4CSU|1|B|U|1882
4CSU|1|B|U|1883
4CSU|1|B|G|1884
4CSU|1|B|A|1885
4CSU|1|B|U|1886
4CSU|1|B|C|1887
4CSU|1|B|G|1888
4CSU|1|B|A|1889
4CSU|1|B|A|1890
4CSU|1|B|G|1891

Current chains

Chain B

23S RRNA

Nearby chains