IL_4CUV_161

3D structure

PDB id

4CUV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAAUGUAG*UAUUAUAGC

Length

17 nucleotides

Bulged bases

4CUV|1|1|U|534, 4CUV|1|1|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CUV_161 not in the Motif Atlas

Geometric match to IL_8CRE_022

Geometric discrepancy: 0.1395

The information below is about IL_8CRE_022

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_43858.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

4CUV|1|1|G|531
4CUV|1|1|A|532
4CUV|1|1|A|533
4CUV|1|1|U|534
4CUV|1|1|G|535
4CUV|1|1|U|536
4CUV|1|1|A|537
4CUV|1|1|G|538
*
4CUV|1|1|U|553
4CUV|1|1|A|554
4CUV|1|1|U|555
4CUV|1|1|U|556
4CUV|1|1|A|557
4CUV|1|1|U|558
4CUV|1|1|A|559
4CUV|1|1|G|560
4CUV|1|1|C|561

Current chains

Chain 1

25S RRNA

Nearby chains