IL_4CUX_108

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UAUUC*GAAGA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CUX_108 not in the Motif Atlas

Geometric match to IL_4LFB_065

Geometric discrepancy: 0.2628

The information below is about IL_4LFB_065

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.1

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

10

Unit IDs

4CUX|1|2|U|886
4CUX|1|2|A|887
4CUX|1|2|U|888
4CUX|1|2|U|889
4CUX|1|2|C|890
*
4CUX|1|2|G|922
4CUX|1|2|A|923
4CUX|1|2|A|924
4CUX|1|2|G|925
4CUX|1|2|A|926

Current chains

Chain 2

18S RRNA

Nearby chains