IL_4CUX_118

3D structure

PDB id

4CUX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Kluyveromyces lactis 80S ribosome in complex with CrPV-IRES

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGCU*AAAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CUX_118 not in the Motif Atlas

Geometric match to IL_8CRE_469

Geometric discrepancy: 0.3262

The information below is about IL_8CRE_469

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28833.1

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4CUX|1|2|C|1644
4CUX|1|2|G|1645
4CUX|1|2|C|1646
4CUX|1|2|U|1647
*
4CUX|1|2|A|1753
4CUX|1|2|A|1754
4CUX|1|2|A|1755
4CUX|1|2|A|1756
4CUX|1|2|G|1757

Current chains

Chain 2

18S RRNA

Nearby chains

Chain Z

RNA OF CRICKET-PARALYSIS-VIRUS-IRES