IL_4CXE_079

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

UUAAG*CCAUA

Length

10 nucleotides

Bulged bases

4CXE|1|2|U|2048

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_079 not in the Motif Atlas

Geometric match to IL_8P9A_276

Geometric discrepancy: 0.1969

The information below is about IL_8P9A_276

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_08938.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

25

Unit IDs

4CXE|1|2|U|1883
4CXE|1|2|U|1884
4CXE|1|2|A|1885
4CXE|1|2|A|1886
4CXE|1|2|G|1887
*
4CXE|1|2|C|2045
4CXE|1|2|C|2046
4CXE|1|2|A|2047
4CXE|1|2|U|2048
4CXE|1|2|A|2049

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 4

5S ribosomal RNA; 5S rRNA