IL_4CXE_087

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CGC*GGUG

Length

7 nucleotides

Bulged bases

4CXE|1|2|G|2320

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_087 not in the Motif Atlas

Geometric match to IL_9DFE_029

Geometric discrepancy: 0.2748

The information below is about IL_9DFE_029

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_42997.6

Basepair signature

cWW-L-R-cWW

Number of instances in this motif group

26

Unit IDs

4CXE|1|2|C|2266
4CXE|1|2|G|2267
4CXE|1|2|C|2268
*
4CXE|1|2|G|2319
4CXE|1|2|G|2320
4CXE|1|2|U|2321
4CXE|1|2|G|2322

Current chains

Chain 2

28S RRNA

Nearby chains