IL_4CXE_095

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

CUGAG*CGAAAG

Length

11 nucleotides

Bulged bases

4CXE|1|2|A|2489, 4CXE|1|2|A|2490

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_095 not in the Motif Atlas

Geometric match to IL_8CRE_067

Geometric discrepancy: 0.1664

The information below is about IL_8CRE_067

Detailed Annotation

UAA/GAN

Broad Annotation

No text annotation

Motif group

IL_38507.2

Basepair signature

cWW-tWH-L-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4CXE|1|2|C|2423
4CXE|1|2|U|2424
4CXE|1|2|G|2425
4CXE|1|2|A|2426
4CXE|1|2|G|2427
*
4CXE|1|2|C|2486
4CXE|1|2|G|2487
4CXE|1|2|A|2488
4CXE|1|2|A|2489
4CXE|1|2|A|2490
4CXE|1|2|G|2491

Current chains

Chain 2

28S RRNA

Nearby chains

Chain 3

5.8S ribosomal RNA; 5.8S rRNA