IL_4CXE_113

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

4CXE|1|2|C|2811

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_113 not in the Motif Atlas

Geometric match to IL_8P9A_302

Geometric discrepancy: 0.1784

The information below is about IL_8P9A_302

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_89862.2

Basepair signature

cWW-L-tHS-L-R-L-cWW-L

Number of instances in this motif group

7

Unit IDs

4CXE|1|2|A|2809
4CXE|1|2|A|2810
4CXE|1|2|C|2811
4CXE|1|2|A|2812
4CXE|1|2|A|2813
4CXE|1|2|U|2814
4CXE|1|2|G|2815
*
4CXE|1|2|C|3819
4CXE|1|2|U|3820
4CXE|1|2|A|3821
4CXE|1|2|U|3822

Current chains

Chain 2

28S RRNA

Nearby chains