IL_4CXE_227

3D structure

PDB id

4CXE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Regulation of the mammalian elongation cycle by 40S subunit rolling: a eukaryotic-specific ribosome rearrangement

Experimental method

ELECTRON MICROSCOPY

Resolution

6.9 Å

Loop

Sequence

GGAAGUCGG*CUGUC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4CXE_227 not in the Motif Atlas

Geometric match to IL_8P9A_305

Geometric discrepancy: 0.1343

The information below is about IL_8P9A_305

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.2

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

11

Unit IDs

4CXE|1|2|G|2824
4CXE|1|2|G|2825
4CXE|1|2|A|2826
4CXE|1|2|A|2827
4CXE|1|2|G|2828
4CXE|1|2|U|2829
4CXE|1|2|C|2830
4CXE|1|2|G|2831
4CXE|1|2|G|2832
*
4CXE|1|2|C|3806
4CXE|1|2|U|3807
4CXE|1|2|G|3808
4CXE|1|2|U|3809
4CXE|1|2|C|3810

Current chains

Chain 2

28S RRNA

Nearby chains