IL_4D5L_004
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAUUAAG*CGC
- Length
- 10 nucleotides
- Bulged bases
- 4D5L|1|1|A|45, 4D5L|1|1|A|46
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_004 not in the Motif Atlas
- Homologous match to IL_4V88_387
- Geometric discrepancy: 0.1672
- The information below is about IL_4V88_387
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_77761.1
- Basepair signature
- cWW-L-R-L-cWW-L-L
- Number of instances in this motif group
- 2
Unit IDs
4D5L|1|1|G|41
4D5L|1|1|A|42
4D5L|1|1|U|43
4D5L|1|1|U|44
4D5L|1|1|A|45
4D5L|1|1|A|46
4D5L|1|1|G|47
*
4D5L|1|1|C|479
4D5L|1|1|G|480
4D5L|1|1|C|481
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain I
- 40S RIBOSOMAL PROTEIN ES8
- Chain J
- 40S RIBOSOMAL PROTEIN US4
- Chain X
- 40S RIBOSOMAL PROTEIN US12
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