IL_4D5L_032
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- AC*GAAU
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_032 not in the Motif Atlas
- Homologous match to IL_4V88_423
- Geometric discrepancy: 0.389
- The information below is about IL_4V88_423
- Detailed Annotation
- Major groove minor groove platform; mini C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_68140.1
- Basepair signature
- cWW-cSH-cWW
- Number of instances in this motif group
- 19
Unit IDs
4D5L|1|1|A|802
4D5L|1|1|C|803
*
4D5L|1|1|G|860
4D5L|1|1|A|861
4D5L|1|1|A|862
4D5L|1|1|U|863
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain H
- 40S RIBOSOMAL PROTEIN ES7
- Chain L
- 40S RIBOSOMAL PROTEIN US17
- Chain W
- 40S RIBOSOMAL PROTEIN US8
- Chain X
- 40S RIBOSOMAL PROTEIN US12
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