IL_4D5L_044
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGA*UCUUUGG
- Length
- 10 nucleotides
- Bulged bases
- 4D5L|1|1|C|1153, 4D5L|1|1|U|1155, 4D5L|1|1|G|1157
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_044 not in the Motif Atlas
- Homologous match to IL_4V88_437
- Geometric discrepancy: 0.1639
- The information below is about IL_4V88_437
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_62898.1
- Basepair signature
- cWW-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
4D5L|1|1|C|1091
4D5L|1|1|G|1092
4D5L|1|1|A|1093
*
4D5L|1|1|U|1152
4D5L|1|1|C|1153
4D5L|1|1|U|1154
4D5L|1|1|U|1155
4D5L|1|1|U|1156
4D5L|1|1|G|1157
4D5L|1|1|G|1158
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain C
- 40S RIBOSOMAL PROTEIN ES28
- Chain L
- 40S RIBOSOMAL PROTEIN US17
- Chain N
- 40S RIBOSOMAL PROTEIN US15
- Chain W
- 40S RIBOSOMAL PROTEIN US8
Coloring options: