IL_4D5L_069
3D structure
- PDB id
- 4D5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUAC*GCGG
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5L_069 not in the Motif Atlas
- Homologous match to IL_4V88_461
- Geometric discrepancy: 0.2351
- The information below is about IL_4V88_461
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_36174.1
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 15
Unit IDs
4D5L|1|1|C|1559
4D5L|1|1|U|1560
4D5L|1|1|A|1561
4D5L|1|1|C|1562
*
4D5L|1|1|G|1573
4D5L|1|1|C|1574
4D5L|1|1|G|1575
4D5L|1|1|G|1576
Current chains
- Chain 1
- 18S RRNA 2
Nearby chains
- Chain T
- 40S RIBOSOMAL PROTEIN ES19
Coloring options: