3D structure

PDB id
4D5L (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
Experimental method
ELECTRON MICROSCOPY
Resolution
9 Å

Loop

Sequence
CUAC*GCGG
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4D5L_069 not in the Motif Atlas
Homologous match to IL_4V88_461
Geometric discrepancy: 0.2351
The information below is about IL_4V88_461
Detailed Annotation
Tandem non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_36174.1
Basepair signature
cWW-cWW-cWW-cWW
Number of instances in this motif group
15

Unit IDs

4D5L|1|1|C|1559
4D5L|1|1|U|1560
4D5L|1|1|A|1561
4D5L|1|1|C|1562
*
4D5L|1|1|G|1573
4D5L|1|1|C|1574
4D5L|1|1|G|1575
4D5L|1|1|G|1576

Current chains

Chain 1
18S RRNA 2

Nearby chains

Chain T
40S RIBOSOMAL PROTEIN ES19

Coloring options:


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