IL_4D5L_076

3D structure

PDB id

4D5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGAU*AGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5L_076 not in the Motif Atlas

Geometric match to IL_4V88_468

Geometric discrepancy: 0.1883

The information below is about IL_4V88_468

Detailed Annotation

Double sheared

Broad Annotation

No text annotation

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

4D5L|1|1|C|1717
4D5L|1|1|G|1718
4D5L|1|1|A|1719
4D5L|1|1|U|1720
*
4D5L|1|1|A|1813
4D5L|1|1|G|1814
4D5L|1|1|A|1815
4D5L|1|1|G|1816

Current chains

Chain 1

18S RRNA 2

Nearby chains