IL_4D5Y_005
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_005 not in the Motif Atlas
- Homologous match to IL_8C3A_006
- Geometric discrepancy: 0.2775
- The information below is about IL_8C3A_006
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_88613.1
- Basepair signature
- cWW-L-R-tSW-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 2
Unit IDs
4D5Y|1|2|C|81
4D5Y|1|2|U|82
4D5Y|1|2|C|83
4D5Y|1|2|A|84
4D5Y|1|2|G|85
4D5Y|1|2|U|86
4D5Y|1|2|A|87
4D5Y|1|2|A|88
*
4D5Y|1|2|U|96
4D5Y|1|2|G|97
4D5Y|1|2|A|98
4D5Y|1|2|A|99
4D5Y|1|2|C|100
4D5Y|1|2|A|101
4D5Y|1|2|G|102
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain N
- 60S RIBOSOMAL PROTEIN EL15
- Chain Q
- 60S RIBOSOMAL PROTEIN EL18
- Chain a
- 60S RIBOSOMAL PROTEIN UL15
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