IL_4D5Y_049
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCCA*UGCGA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_049 not in the Motif Atlas
- Geometric match to IL_7EU9_001
- Geometric discrepancy: 0.3596
- The information below is about IL_7EU9_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4D5Y|1|2|U|1672
4D5Y|1|2|C|1673
4D5Y|1|2|C|1701
4D5Y|1|2|A|1702
*
4D5Y|1|2|U|1817
4D5Y|1|2|G|1818
4D5Y|1|2|C|1819
4D5Y|1|2|G|1820
4D5Y|1|2|A|1821
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain Q
- 60S RIBOSOMAL PROTEIN EL18
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
- Chain b
- 60S RIBOSOMAL PROTEIN EL29
Coloring options: