IL_4D5Y_053
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GCGAAUG*CAAAC
- Length
- 12 nucleotides
- Bulged bases
- 4D5Y|1|2|G|1720
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_053 not in the Motif Atlas
- Geometric match to IL_4V9F_035
- Geometric discrepancy: 0.2532
- The information below is about IL_4V9F_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_06691.1
- Basepair signature
- cWW-cWS-L-R-L-R-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
4D5Y|1|2|G|1718
4D5Y|1|2|C|1719
4D5Y|1|2|G|1720
4D5Y|1|2|A|1721
4D5Y|1|2|A|1722
4D5Y|1|2|U|1723
4D5Y|1|2|G|1724
*
4D5Y|1|2|C|1764
4D5Y|1|2|A|1765
4D5Y|1|2|A|1766
4D5Y|1|2|A|1767
4D5Y|1|2|C|1768
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain D
- 60S RIBOSOMAL PROTEIN UL18
- Chain I
- 60S RIBOSOMAL PROTEIN UL16
- Chain T
- 60S RIBOSOMAL PROTEIN EL21
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