IL_4D5Y_088

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

4D5Y|1|2|U|2857

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_088 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.1483

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

4D5Y|1|2|C|2844
4D5Y|1|2|G|2845
4D5Y|1|2|U|2846
4D5Y|1|2|A|2847
4D5Y|1|2|A|2848
4D5Y|1|2|C|2849
*
4D5Y|1|2|G|2854
4D5Y|1|2|G|2855
4D5Y|1|2|A|2856
4D5Y|1|2|U|2857
4D5Y|1|2|A|2858
4D5Y|1|2|A|2859
4D5Y|1|2|G|2860

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN EL41

Chain p

60S RIBOSOMAL PROTEIN EL43