IL_4D5Y_098

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_098 not in the Motif Atlas

Geometric match to IL_4C7O_002

Geometric discrepancy: 0.2778

The information below is about IL_4C7O_002

Detailed Annotation

Single stack bend

Broad Annotation

Single stack bend

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

4D5Y|1|2|G|3723
4D5Y|1|2|G|3724
*
4D5Y|1|2|C|3738
4D5Y|1|2|U|3739
4D5Y|1|2|C|3740

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains