IL_4D5Y_124

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UUG*CCAAG

Length

8 nucleotides

Bulged bases

4D5Y|1|2|A|4448

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_124 not in the Motif Atlas

Geometric match to IL_3DD2_004

Geometric discrepancy: 0.3883

The information below is about IL_3DD2_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_09353.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4D5Y|1|2|U|4428
4D5Y|1|2|U|4429
4D5Y|1|2|G|4430
*
4D5Y|1|2|C|4445
4D5Y|1|2|C|4446
4D5Y|1|2|A|4447
4D5Y|1|2|A|4448
4D5Y|1|2|G|4449

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN UL6

Chain O

60S RIBOSOMAL PROTEIN UL13

Chain m

60S RIBOSOMAL PROTEIN EL40