IL_4D5Y_140

3D structure

PDB id

4D5Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D5Y_140 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2517

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4D5Y|1|2|U|4840
4D5Y|1|2|C|4841
4D5Y|1|2|C|4842
4D5Y|1|2|U|4843
4D5Y|1|2|G|4844
*
4D5Y|1|2|C|4885
4D5Y|1|2|G|4886
4D5Y|1|2|U|4887
4D5Y|1|2|C|4888
4D5Y|1|2|A|4889

Current chains

Chain 2

28S Ribosomal RNA

Nearby chains

Chain E

60S RIBOSOMAL PROTEIN EL6

Chain M

60S RIBOSOMAL PROTEIN EL14

Chain O

60S RIBOSOMAL PROTEIN UL13