IL_4D5Y_158
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 4D5Y|1|4|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_158 not in the Motif Atlas
- Homologous match to IL_5TBW_378
- Geometric discrepancy: 0.1584
- The information below is about IL_5TBW_378
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_44258.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 301
Unit IDs
4D5Y|1|4|G|82
4D5Y|1|4|A|83
4D5Y|1|4|U|84
4D5Y|1|4|G|85
*
4D5Y|1|4|C|92
4D5Y|1|4|G|93
4D5Y|1|4|C|94
Current chains
- Chain 4
- 5S Ribosomal RNA
Nearby chains
- Chain 2
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 60S RIBOSOMAL PROTEIN UL30
- Chain I
- 60S RIBOSOMAL PROTEIN UL16
- Chain S
- 60S RIBOSOMAL PROTEIN EL20
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