IL_4D5Y_162
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UCGUGGGGGG*CCG
- Length
- 13 nucleotides
- Bulged bases
- 4D5Y|1|2|C|182, 4D5Y|1|2|G|185, 4D5Y|1|2|G|188
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_162 not in the Motif Atlas
- Geometric match to IL_7A0S_031
- Geometric discrepancy: 0.3326
- The information below is about IL_7A0S_031
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_87907.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 179
Unit IDs
4D5Y|1|2|U|181
4D5Y|1|2|C|182
4D5Y|1|2|G|183
4D5Y|1|2|U|184
4D5Y|1|2|G|185
4D5Y|1|2|G|186
4D5Y|1|2|G|187
4D5Y|1|2|G|188
4D5Y|1|2|G|189
4D5Y|1|2|G|190
*
4D5Y|1|2|C|245
4D5Y|1|2|C|246
4D5Y|1|2|G|247
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S RIBOSOMAL PROTEIN UL4
- Chain L
- 60S RIBOSOMAL PROTEIN EL13
- Chain Y
- 60S RIBOSOMAL PROTEIN UL24
- Chain h
- 60S RIBOSOMAL PROTEIN UL29
- Chain j
- 60S RIBOSOMAL PROTEIN EL37
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