IL_4D5Y_185
3D structure
- PDB id
- 4D5Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGAGU*GCGCC
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D5Y_185 not in the Motif Atlas
- Geometric match to IL_8D29_010
- Geometric discrepancy: 0.3323
- The information below is about IL_8D29_010
- Detailed Annotation
- Partly complementary
- Broad Annotation
- Partly complementary
- Motif group
- IL_49751.4
- Basepair signature
- cWW-cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
4D5Y|1|2|G|2518
4D5Y|1|2|G|2519
4D5Y|1|2|A|2520
4D5Y|1|2|G|2521
4D5Y|1|2|U|2522
*
4D5Y|1|2|G|2748
4D5Y|1|2|C|2749
4D5Y|1|2|G|2750
4D5Y|1|2|C|2751
4D5Y|1|2|C|2752
Current chains
- Chain 2
- 28S Ribosomal RNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain g
- 60S RIBOSOMAL PROTEIN EL34
- Chain k
- 60S RIBOSOMAL PROTEIN EL38
Coloring options: