IL_4D61_008

3D structure

PDB id

4D61 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UGGU*AA

Length

6 nucleotides

Bulged bases

4D61|1|1|G|113, 4D61|1|1|G|114

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D61_008 not in the Motif Atlas

Homologous match to IL_4V88_392

Geometric discrepancy: 0.2712

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4D61|1|1|U|112
4D61|1|1|G|113
4D61|1|1|G|114
4D61|1|1|U|115
*
4D61|1|1|A|348
4D61|1|1|A|349

Current chains

Chain 1

18S RRNA

Nearby chains

Chain E

40S RIBOSOMAL PROTEIN S4, Y ISOFORM 1

Chain I

40S RIBOSOMAL PROTEIN S8

Chain L

40S RIBOSOMAL PROTEIN S11