IL_4D61_029
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CGUAG*UCAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_029 not in the Motif Atlas
- Homologous match to IL_4V88_418
- Geometric discrepancy: 0.2005
- The information below is about IL_4V88_418
- Detailed Annotation
- tSH-tHW-tHS
- Broad Annotation
- No text annotation
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4D61|1|1|C|676
4D61|1|1|G|677
4D61|1|1|U|678
4D61|1|1|A|679
4D61|1|1|G|680
*
4D61|1|1|U|1025
4D61|1|1|C|1026
4D61|1|1|A|1027
4D61|1|1|A|1028
4D61|1|1|G|1029
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain L
- 40S RIBOSOMAL PROTEIN S11
- Chain N
- 40S RIBOSOMAL PROTEIN S13
- Chain W
- 40S RIBOSOMAL PROTEIN S15A
- Chain X
- 40S RIBOSOMAL PROTEIN S23
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