IL_4D61_040
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GUAU*AGAC
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_040 not in the Motif Atlas
- Homologous match to IL_4V88_432
- Geometric discrepancy: 0.2038
- The information below is about IL_4V88_432
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4D61|1|1|G|942
4D61|1|1|U|943
4D61|1|1|A|944
4D61|1|1|U|945
*
4D61|1|1|A|981
4D61|1|1|G|982
4D61|1|1|A|983
4D61|1|1|C|984
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain B
- 40S RIBOSOMAL PROTEIN S3A
- Chain O
- 40S RIBOSOMAL PROTEIN S14
- Chain a
- 40S RIBOSOMAL PROTEIN S26
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