IL_4D61_059
3D structure
- PDB id
- 4D61 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGG*UCUGUGA
- Length
- 10 nucleotides
- Bulged bases
- 4D61|1|1|U|1494, 4D61|1|1|G|1497
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D61_059 not in the Motif Atlas
- Homologous match to IL_4V88_451
- Geometric discrepancy: 0.1988
- The information below is about IL_4V88_451
- Detailed Annotation
- Minor groove platform with extra cWW
- Broad Annotation
- Minor groove platform
- Motif group
- IL_97255.1
- Basepair signature
- cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
4D61|1|1|U|1333
4D61|1|1|G|1334
4D61|1|1|G|1335
*
4D61|1|1|U|1492
4D61|1|1|C|1493
4D61|1|1|U|1494
4D61|1|1|G|1495
4D61|1|1|U|1496
4D61|1|1|G|1497
4D61|1|1|A|1498
Current chains
- Chain 1
- 18S RRNA
Nearby chains
- Chain D
- 40S RIBOSOMAL PROTEIN S3
- Chain K
- 40S RIBOSOMAL PROTEIN S10
- Chain U
- 40S RIBOSOMAL PROTEIN S20
- Chain d
- 40S RIBOSOMAL PROTEIN S29
- Chain h
- EUKARYOTIC PEPTIDE CHAIN RELEASE FACTOR SUBUNIT 1
Coloring options: