IL_4D67_030
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UC*GCCCG
- Length
- 7 nucleotides
- Bulged bases
- 4D67|1|2|C|1194, 4D67|1|2|C|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_030 not in the Motif Atlas
- Geometric match to IL_1R3E_001
- Geometric discrepancy: 0.332
- The information below is about IL_1R3E_001
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_84476.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 13
Unit IDs
4D67|1|2|U|1063
4D67|1|2|C|1064
*
4D67|1|2|G|1193
4D67|1|2|C|1194
4D67|1|2|C|1195
4D67|1|2|C|1196
4D67|1|2|G|1197
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN L7
Coloring options: