IL_4D67_046
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 4D67|1|2|G|1604, 4D67|1|2|A|1616, 4D67|1|2|A|1617, 4D67|1|2|U|1618
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_046 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.2101
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4D67|1|2|G|1603
4D67|1|2|G|1604
4D67|1|2|G|1605
*
4D67|1|2|U|1615
4D67|1|2|A|1616
4D67|1|2|A|1617
4D67|1|2|U|1618
4D67|1|2|C|1619
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain N
- 60S RIBOSOMAL PROTEIN L15
- Chain P
- 60S RIBOSOMAL PROTEIN L17
- Chain j
- 60S RIBOSOMAL PROTEIN L37
Coloring options: