IL_4D67_060
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUAAG*CCAUA
- Length
- 10 nucleotides
- Bulged bases
- 4D67|1|2|U|2048
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_060 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1906
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4D67|1|2|U|1883
4D67|1|2|U|1884
4D67|1|2|A|1885
4D67|1|2|A|1886
4D67|1|2|G|1887
*
4D67|1|2|C|2045
4D67|1|2|C|2046
4D67|1|2|A|2047
4D67|1|2|U|2048
4D67|1|2|A|2049
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 4
- 5S ribosomal RNA; 5S rRNA
- Chain F
- 60S RIBOSOMAL PROTEIN L7
- Chain e
- 60S RIBOSOMAL PROTEIN L32
- Chain f
- 60S RIBOSOMAL PROTEIN L35A
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