IL_4D67_062
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CCG*CG
- Length
- 5 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_062 not in the Motif Atlas
- Geometric match to IL_7Q80_003
- Geometric discrepancy: 0.2961
- The information below is about IL_7Q80_003
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_44609.1
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 28
Unit IDs
4D67|1|2|C|1898
4D67|1|2|C|1899
4D67|1|2|G|1900
*
4D67|1|2|C|2040
4D67|1|2|G|2041
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain F
- 60S RIBOSOMAL PROTEIN L7
- Chain M
- 60S RIBOSOMAL PROTEIN L14
- Chain O
- 60S RIBOSOMAL PROTEIN L13A
- Chain S
- 60S RIBOSOMAL PROTEIN L18A
- Chain f
- 60S RIBOSOMAL PROTEIN L35A
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