IL_4D67_074
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- CUGAG*CGAAAG
- Length
- 11 nucleotides
- Bulged bases
- 4D67|1|2|A|2489, 4D67|1|2|A|2490
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_074 not in the Motif Atlas
- Homologous match to IL_8C3A_067
- Geometric discrepancy: 0.1662
- The information below is about IL_8C3A_067
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
4D67|1|2|C|2423
4D67|1|2|U|2424
4D67|1|2|G|2425
4D67|1|2|A|2426
4D67|1|2|G|2427
*
4D67|1|2|C|2486
4D67|1|2|G|2487
4D67|1|2|A|2488
4D67|1|2|A|2489
4D67|1|2|A|2490
4D67|1|2|G|2491
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain 3
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain A
- 60S RIBOSOMAL PROTEIN L8
- Chain g
- 60S RIBOSOMAL PROTEIN L34
- Chain j
- 60S RIBOSOMAL PROTEIN L37
- Chain l
- 60S RIBOSOMAL PROTEIN L39
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