IL_4D67_097

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCAAAGU*AAUGAAG

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_097 not in the Motif Atlas

Homologous match to IL_5TBW_088

Geometric discrepancy: 0.231

The information below is about IL_5TBW_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_36973.8

Basepair signature

cWW-tSH-L-R-L-R-L-R-cWW-cWW

Number of instances in this motif group

3

Unit IDs

4D67|1|2|U|3684
4D67|1|2|C|3685
4D67|1|2|A|3686
4D67|1|2|A|3687
4D67|1|2|A|3688
4D67|1|2|G|3689
4D67|1|2|U|3690
*
4D67|1|2|A|3701
4D67|1|2|A|3702
4D67|1|2|U|3703
4D67|1|2|G|3704
4D67|1|2|A|3705
4D67|1|2|A|3706
4D67|1|2|G|3707

Current chains

Chain 2

28S RRNA

Nearby chains

Chain A

60S RIBOSOMAL PROTEIN L8

Chain i

60S RIBOSOMAL PROTEIN L36