IL_4D67_100

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

4D67|1|2|A|3754, 4D67|1|2|C|3760, 4D67|1|2|C|3779

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_100 not in the Motif Atlas

Homologous match to IL_5TBW_090

Geometric discrepancy: 0.3201

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

4D67|1|2|C|3750
4D67|1|2|C|3751
4D67|1|2|A|3752
4D67|1|2|A|3753
4D67|1|2|A|3754
4D67|1|2|U|3755
4D67|1|2|G|3756
4D67|1|2|C|3757
4D67|1|2|C|3758
4D67|1|2|U|3759
4D67|1|2|C|3760
4D67|1|2|G|3761
*
4D67|1|2|C|3777
4D67|1|2|G|3778
4D67|1|2|C|3779
4D67|1|2|G|3780

Current chains

Chain 2

28S RRNA

Nearby chains

Chain n

60S RIBOSOMAL PROTEIN L41