IL_4D67_113
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UUGA*UACA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_113 not in the Motif Atlas
- Homologous match to IL_8C3A_109
- Geometric discrepancy: 0.2985
- The information below is about IL_8C3A_109
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_67085.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
4D67|1|2|U|4255
4D67|1|2|U|4256
4D67|1|2|G|4257
4D67|1|2|A|4258
*
4D67|1|2|U|4272
4D67|1|2|A|4273
4D67|1|2|C|4274
4D67|1|2|A|4275
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain D
- 60S RIBOSOMAL PROTEIN L5
- Chain Q
- 60S RIBOSOMAL PROTEIN L18
- Chain T
- 60S RIBOSOMAL PROTEIN L21
- Chain b
- 60S RIBOSOMAL PROTEIN L29
- Chain o
- 60S RIBOSOMAL PROTEIN L36A
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