IL_4D67_130
3D structure
- PDB id
- 4D67 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 9 Å
Loop
- Sequence
- UGUAUG*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 4D67|1|2|U|4594, 4D67|1|2|U|4596
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4D67_130 not in the Motif Atlas
- Homologous match to IL_5TBW_118
- Geometric discrepancy: 0.2
- The information below is about IL_5TBW_118
- Detailed Annotation
- UAA/GAN related
- Broad Annotation
- UAA/GAN related
- Motif group
- IL_17136.4
- Basepair signature
- cWW-R-L-tHS-tHW-cWW
- Number of instances in this motif group
- 18
Unit IDs
4D67|1|2|U|4592
4D67|1|2|G|4593
4D67|1|2|U|4594
4D67|1|2|A|4595
4D67|1|2|U|4596
4D67|1|2|G|4597
*
4D67|1|2|C|4622
4D67|1|2|G|4623
4D67|1|2|A|4624
4D67|1|2|A|4625
4D67|1|2|G|4626
Current chains
- Chain 2
- 28S RRNA
Nearby chains
- Chain B
- 60S RIBOSOMAL PROTEIN L3
- Chain W
- 60S RIBOSOMAL PROTEIN L24
- Chain d
- 60S RIBOSOMAL PROTEIN L31
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