IL_4D67_133

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GAUUAU*AGAAUC

Length

12 nucleotides

Bulged bases

4D67|1|2|A|4668

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_133 not in the Motif Atlas

Geometric match to IL_5J7L_350

Geometric discrepancy: 0.2307

The information below is about IL_5J7L_350

Detailed Annotation

UAA/GAN with extra cWW

Broad Annotation

No text annotation

Motif group

IL_49767.8

Basepair signature

cWW-cWW-tWH-L-tHS-cWW

Number of instances in this motif group

6

Unit IDs

4D67|1|2|G|4640
4D67|1|2|A|4641
4D67|1|2|U|4642
4D67|1|2|U|4643
4D67|1|2|A|4644
4D67|1|2|U|4645
*
4D67|1|2|A|4665
4D67|1|2|G|4666
4D67|1|2|A|4667
4D67|1|2|A|4668
4D67|1|2|U|4669
4D67|1|2|C|4670

Current chains

Chain 2

28S RRNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN L9

Chain O

60S RIBOSOMAL PROTEIN L13A

Chain m

UBIQUITIN-60S RIBOSOMAL PROTEIN L40