IL_4D67_136

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

GUC*GUC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_136 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.184

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

4D67|1|2|G|4728
4D67|1|2|U|4729
4D67|1|2|C|4730
*
4D67|1|2|G|4818
4D67|1|2|U|4819
4D67|1|2|C|4820

Current chains

Chain 2

28S RRNA

Nearby chains

Chain H

60S RIBOSOMAL PROTEIN L9

Chain O

60S RIBOSOMAL PROTEIN L13A