IL_4D67_140

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_140 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.2517

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4D67|1|2|U|4840
4D67|1|2|C|4841
4D67|1|2|C|4842
4D67|1|2|U|4843
4D67|1|2|G|4844
*
4D67|1|2|C|4885
4D67|1|2|G|4886
4D67|1|2|U|4887
4D67|1|2|C|4888
4D67|1|2|A|4889

Current chains

Chain 2

28S RRNA

Nearby chains

Chain E

60S RIBOSOMAL PROTEIN L6

Chain M

60S RIBOSOMAL PROTEIN L14

Chain O

60S RIBOSOMAL PROTEIN L13A