IL_4D67_154

3D structure

PDB id

4D67 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of ribosomal 80S complexes with termination factors and cricket paralysis virus IRES reveal the IRES in the translocated state

Experimental method

ELECTRON MICROSCOPY

Resolution

9 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4D67_154 not in the Motif Atlas

Geometric match to IL_8C3A_142

Geometric discrepancy: 0.2741

The information below is about IL_8C3A_142

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

4D67|1|4|C|15
4D67|1|4|A|16
*
4D67|1|4|U|62
4D67|1|4|C|63
4D67|1|4|G|64

Current chains

Chain 4

5S RRNA

Nearby chains

Chain 2

Large subunit ribosomal RNA; LSU rRNA

Chain D

60S RIBOSOMAL PROTEIN L5

Chain I

60S RIBOSOMAL PROTEIN L10

Chain J

60S RIBOSOMAL PROTEIN L11